SigFuge

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.23 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SigFuge.

All versions

3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

SigFuge

Bioconductor version: Release (3.23)

Algorithm for testing significance of clustering in RNA-seq data.

Author: Patrick Kimes, Christopher Cabanski

Maintainer: Patrick Kimes <patrick.kimes at gmail.com>

Citation (from within R, enter citation("SigFuge")):

Patrick Kimes, Christopher Cabanski. SigFuge: SigFuge. doi:10.18129/B9.bioc.SigFuge, R package version 1.50.0, https://bioconductor.org/packages/SigFuge.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SigFuge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, ImmunoOncology, RNASeq, Software, Visualization
Version	1.50.0
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	GPL-3
Depends	R (>= 3.5.0), GenomicRanges
Imports	ggplot2, matlab, reshape, sigclust
System Requirements
URL

Suggests	org.Hs.eg.db, prebsdata, Rsamtools (>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SigFuge
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SigFuge
Package Short Url	https://bioconductor.org/packages/SigFuge/
Package Downloads Report	Download Stats