SigFuge

SigFuge

Bioconductor version: Development (3.0)

Algorithm for testing significance of clustering in RNA-seq data.

Author: Patrick Kimes, Christopher Cabanski

Maintainer: Patrick Kimes <pkimes at live.unc.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SigFuge")

To cite this package in a publication, start R and enter:

    citation("SigFuge")

Documentation

PDF R Script SigFuge Tutorial
PDF   Reference Manual

Details

biocViews Clustering, RNASeq, Software, Visualization
Version 1.3.1
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.0.2), GenomicRanges
Imports ggplot2, matlab, reshape, sigclust
Suggests org.Hs.eg.db, prebsdata, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source SigFuge_1.3.1.tar.gz
Windows Binary SigFuge_1.3.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SigFuge_1.3.1.tgz
Mac OS X 10.9 (Mavericks)
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