DOI: 10.18129/B9.bioc.TxDb.Hsapiens.UCSC.hg19.knownGene    

Annotation package for TxDb object(s)

Bioconductor version: Release (3.8)

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews AnnotationData, Genetics, Homo_sapiens, TxDb
Version 3.2.2
License Artistic-2.0
Depends GenomicFeatures(>= 1.21.30)
Imports AnnotationDbi
Depends On Me annotation, chimera, FDb.InfiniumMethylation.hg19, FunciSNP, Homo.sapiens, TFEA.ChIP, variants, vulcan
Imports Me appreci8R, ChIPQC, ChIPseeker, RareVariantVis, rCGH
Suggests Me AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, BiocOncoTK, BiocParallel, biomvRCNS, biovizBase, BSgenome.Hsapiens.UCSC.hg19, bumphunter, cgdv17, chipenrich.data, ChIPpeakAnno, chromPlot, cpvSNP, CRISPRseek, derfinder, derfinderPlot, esATAC, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GoogleGenomics, gQTLstats, groHMM, GUIDEseq, HTSeqGenie, InPAS, karyoploteR, MAST, methyAnalysis, MutationalPatterns, OUTRIDER, PureCN, R3CPET, regionReport, RiboProfiling, rtracklayer, SGSeq, SigFuge, SplicingGraphs, SummarizedExperiment, TCGAutils, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering
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Follow Installation instructions to use this package in your R session.

Source Package TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url http://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
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