To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GA4GHclient")

In most cases, you don't need to download the package archive at all.

GA4GHclient

 

A Bioconductor package for accessing GA4GH API data servers

Bioconductor version: Release (3.5)

GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("GA4GHclient")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GA4GHclient")

Documentation

HTML R Script GA4GHclient
PDF   Reference Manual

Details

biocViews DataRepresentation, Software, ThirdPartyClient
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License GPL (>= 2)
Depends S4Vectors
Imports BiocGenerics, Biostrings, dplyr, GenomeInfoDb, GenomicRanges, httr, IRanges, jsonlite, methods, purrr, VariantAnnotation
LinkingTo
Suggests AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://github.com/labbcb/GA4GHclient
BugReports https://github.com/labbcb/GA4GHclient/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GA4GHclient_1.0.0.tar.gz
Windows Binary GA4GHclient_1.0.0.zip
Mac OS X 10.11 (El Capitan) GA4GHclient_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GA4GHclient
Package Short Url http://bioconductor.org/packages/GA4GHclient/
Package Downloads Report Download Stats

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