randRotation

DOI: 10.18129/B9.bioc.randRotation    

Random Rotation Methods for High Dimensional Data with Batch Structure

Bioconductor version: Release (3.12)

A collection of methods for performing random rotations on high-dimensional, normally distributed data (e.g. microarray or RNA-seq data) with batch structure. The random rotation approach allows exact testing of dependent test statistics with linear models following arbitrary batch effect correction methods.

Author: Peter Hettegger [aut, cre]

Maintainer: Peter Hettegger <p.hettegger at gmail.com>

Citation (from within R, enter citation("randRotation")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("randRotation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("randRotation")

 

PDF R Script Random Rotation Package Introduction
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, BiomedicalInformatics, DifferentialExpression, GeneExpression, Genetics, MicroRNAArray, Microarray, Normalization, Preprocessing, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.2.1
In Bioconductor since BioC 3.11 (R-4.0) (0.5 years)
License GPL-3
Depends
Imports methods, graphics, utils, stats, Rdpack (>= 0.7)
LinkingTo
Suggests knitr, BiocParallel, lme4, nlme, rmarkdown, BiocStyle, testthat (>= 2.1.0), limma, sva
SystemRequirements
Enhances
URL https://github.com/phettegger/randRotation
BugReports https://github.com/phettegger/randRotation/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package randRotation_1.2.1.tar.gz
Windows Binary randRotation_1.2.1.zip
macOS 10.13 (High Sierra) randRotation_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/randRotation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/randRotation
Package Short Url https://bioconductor.org/packages/randRotation/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive

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