celldex

DOI: 10.18129/B9.bioc.celldex    

Reference Index for Cell Types

Bioconductor version: Release (3.12)

Provides a collection of reference expression datasets with curated cell type labels, for use in procedures like automated annotation of single-cell data or deconvolution of bulk RNA-seq.

Author: Dvir Aran [aut], Aaron Lun [aut, cre, cph], Daniel Bunis [aut], Jared Andrews [aut], Friederike D√ľndar [aut]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("celldex")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("celldex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("celldex")

 

HTML R Script Cell type references
PDF   Reference Manual

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version 1.0.0
License GPL-3
Depends SummarizedExperiment
Imports utils, ExperimentHub, AnnotationHub, AnnotationDbi, S4Vectors, DelayedArray, DelayedMatrixStats
LinkingTo
Suggests testthat, knitr, rmarkdown, BiocStyle, DT
SystemRequirements
Enhances
URL https://github.com/LTLA/celldex
BugReports https://support.bioconductor.org/
Depends On Me
Imports Me
Suggests Me ontoProc, SingleR, tidySingleCellExperiment
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package celldex_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/celldex
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/celldex
Package Short Url https://bioconductor.org/packages/celldex/
Package Downloads Report Download Stats

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