snifter

DOI: 10.18129/B9.bioc.snifter    

R wrapper for the python openTSNE library

Bioconductor version: Release (3.12)

Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019) and the algorithm described by Linderman et al. (2018) .

Author: Alan O'Callaghan [aut, cre], Aaron Lun [aut]

Maintainer: Alan O'Callaghan <alan.ocallaghan at outlook.com>

Citation (from within R, enter citation("snifter")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("snifter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snifter")

 

HTML R Script Introduction to snifter
PDF   Reference Manual
Text   NEWS

Details

biocViews DimensionReduction, Sequencing, SingleCell, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends R (>= 4.0.0)
Imports basilisk, reticulate, assertthat
LinkingTo
Suggests knitr, rmarkdown, scRNAseq, BiocStyle, scater, scran, scuttle, ggplot2, testthat
SystemRequirements
Enhances
URL
BugReports https://github.com/Alanocallaghan/snifter/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package snifter_1.0.0.tar.gz
Windows Binary snifter_1.0.0.zip
macOS 10.13 (High Sierra) snifter_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/snifter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/snifter
Package Short Url https://bioconductor.org/packages/snifter/
Package Downloads Report Download Stats

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