snifter

DOI: 10.18129/B9.bioc.snifter    

This is the development version of snifter; for the stable release version, see snifter.

R wrapper for the python openTSNE library

Bioconductor version: Development (3.13)

Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019) and the algorithm described by Linderman et al. (2018) .

Author: Alan O'Callaghan [aut, cre], Aaron Lun [aut]

Maintainer: Alan O'Callaghan <alan.ocallaghan at outlook.com>

Citation (from within R, enter citation("snifter")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("snifter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews DimensionReduction, Sequencing, SingleCell, Software, Visualization
Version 1.1.4
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends R (>= 4.0.0)
Imports basilisk, reticulate, assertthat
LinkingTo
Suggests knitr, rmarkdown, scRNAseq, BiocStyle, scater, scran, scuttle, ggplot2, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL
BugReports https://github.com/Alanocallaghan/snifter/issues
Depends On Me
Imports Me
Suggests Me scater
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary snifter_1.1.4.zip
macOS 10.13 (High Sierra) snifter_1.1.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/snifter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/snifter
Package Short Url https://bioconductor.org/packages/snifter/
Package Downloads Report Download Stats

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