Rcwl

DOI: 10.18129/B9.bioc.Rcwl    

An R interface to the Common Workflow Language

Bioconductor version: Release (3.14)

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

Author: Qiang Hu [aut, cre], Qian Liu [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("Rcwl")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rcwl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rcwl")

 

HTML R Script Rcwl: An R interface to the Common Workflow Language
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ImmunoOncology, Software, WorkflowStep
Version 1.10.0
In Bioconductor since BioC 3.9 (R-3.6) (2.5 years)
License GPL-2 | file LICENSE
Depends R (>= 3.6), yaml, methods, S4Vectors
Imports utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools, basilisk
LinkingTo
Suggests testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me RcwlPipelines
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rcwl_1.10.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra) Rcwl_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rcwl
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rcwl
Package Short Url https://bioconductor.org/packages/Rcwl/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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