optimalFlow

DOI: 10.18129/B9.bioc.optimalFlow    

optimalFlow

Bioconductor version: Release (3.11)

Optimal-transport techniques applied to supervised flow cytometry gating.

Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Citation (from within R, enter citation("optimalFlow")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("optimalFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("optimalFlow")

 

HTML R Script optimalFlow: optimal-transport approach to Flow Cytometry analysis
PDF   Reference Manual

Details

biocViews FlowCytometry, Software, Technology
Version 1.0.0
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License Artistic-2.0
Depends dplyr, optimalFlowData, rlang (>= 0.4.0)
Imports transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse
LinkingTo
Suggests knitr, BiocStyle, rmarkdown, magick
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package optimalFlow_1.0.0.tar.gz
Windows Binary optimalFlow_1.0.0.zip
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/optimalFlow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/optimalFlow
Package Short Url https://bioconductor.org/packages/optimalFlow/
Package Downloads Report Download Stats

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