TENxBUSData

DOI: 10.18129/B9.bioc.TENxBUSData    

Single cell dataset from 10x in BUS format

Bioconductor version: Release (3.10)

Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.

Author: Lambda Moses [aut, cre]

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Citation (from within R, enter citation("TENxBUSData")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxBUSData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBUSData")

 

HTML R Script Downloading BUS data
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SequencingData, SingleCellData
Version 1.0.0
License BSD_2_clause + file LICENSE
Depends
Imports ExperimentHub, AnnotationHub, utils, BiocGenerics
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL https://github.com/BUStools/TENxBUSData
BugReports https://github.com/BUStools/TENxBUSData/issues
Depends On Me
Imports Me
Suggests Me BUSpaRse
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxBUSData_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/TENxBUSData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxBUSData
Package Short Url https://bioconductor.org/packages/TENxBUSData/
Package Downloads Report Download Stats

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