To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HiTC")

In most cases, you don't need to download the package archive at all.

HiTC

 

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: Release (3.1)

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.

Author: Nicolas Servant

Maintainer: Nicolas Servant <nicolas.servant at curie.fr>

Citation (from within R, enter citation("HiTC")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HiTC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiTC")

 

PDF R Script Hi-C data analysis using HiTC
PDF R Script Introduction to HiTC package
PDF   Reference Manual
Text   NEWS

Details

biocViews HiC, HighThroughputSequencing, Sequencing, Software
Version 1.12.0
In Bioconductor since BioC 2.10 (R-2.15) (3 years)
License Artistic-2.0
Depends R (>= 2.15.0), methods, IRanges, GenomicRanges
Imports Biostrings, graphics, grDevices, rtracklayer, RColorBrewer, Matrix
LinkingTo
Suggests BiocStyle, HiCDataHumanIMR90
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me HiCDataHumanIMR90
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HiTC_1.12.0.tar.gz
Windows Binary HiTC_1.12.0.zip
Mac OS X 10.6 (Snow Leopard) HiTC_1.12.0.tgz
Mac OS X 10.9 (Mavericks) HiTC_1.12.0.tgz
Browse/checkout source (username/password: readonly)
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