MultiBaC

DOI: 10.18129/B9.bioc.MultiBaC    

Multiomic Batch effect Correction

Bioconductor version: Release (3.12)

MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.

Author: person("Manuel", "Ugidos", email = "manuelugidos@gmail.com"), person("Sonia", "Tarazona", email = "sotacam@gmail.com"), person("María José", "Nueda", email = "mjnueda@ua.es")

Maintainer: The package maintainer <manuelugidos at gmail.com>

Citation (from within R, enter citation("MultiBaC")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultiBaC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiBaC")

 

HTML R Script MultiBaC
PDF   Reference Manual

Details

biocViews BatchEffect, DataRepresentation, GeneExpression, PrincipalComponent, Software, StatisticalMethod, Transcription
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends
Imports Matrix, ggplot2, MultiAssayExperiment, ropls, graphics, methods
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, devtools
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultiBaC_1.0.0.tar.gz
Windows Binary MultiBaC_1.0.0.zip
macOS 10.13 (High Sierra) MultiBaC_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MultiBaC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MultiBaC
Package Short Url https://bioconductor.org/packages/MultiBaC/
Package Downloads Report Download Stats

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