yamss

DOI: 10.18129/B9.bioc.yamss    

Tools for high-throughput metabolomics

Bioconductor version: Release (3.8)

Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis.

Author: Leslie Myint [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("yamss")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("yamss", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yamss")

 

HTML R Script yamss User's Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.8.1
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License Artistic-2.0
Depends R (>= 3.3.0), methods, BiocGenerics(>= 0.15.3), SummarizedExperiment
Imports IRanges, stats, S4Vectors, EBImage, Matrix, mzR, data.table, grDevices, limma
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat
SystemRequirements
Enhances
URL https://github.com/hansenlab/yamss
BugReports https://github.com/hansenlab/yamss/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package yamss_1.8.1.tar.gz
Windows Binary yamss_1.8.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) yamss_1.8.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/yamss
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yamss
Package Short Url http://bioconductor.org/packages/yamss/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

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