To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RedeR")

In most cases, you don't need to download the package archive at all.

RedeR

Interactive visualization and manipulation of nested networks

Bioconductor version: Release (3.0)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RedeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")

 

PDF R Script Main vignette: interactive visualization and manipulation of nested networks
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL (>= 2)
Depends R (>= 2.15), methods, igraph
Imports RCurl, XML
Suggests PANR, pvclust
System Requirements
URL http://genomebiology.com/2012/13/4/R29
Depends On Me Fletcher2013b
Imports Me Mulder2012, RTN
Suggests Me PANR

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RedeR_1.14.0.tar.gz
Windows Binary RedeR_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RedeR_1.14.0.tgz
Mac OS X 10.9 (Mavericks) RedeR_1.14.0.tgz
Browse/checkout source (username/password: readonly)
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