To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RedeR")

In most cases, you don't need to download the package archive at all.

RedeR

DOI: 10.18129/B9.bioc.RedeR    

This is the development version of RedeR; for the stable release version, see RedeR.

Interactive visualization and manipulation of nested networks

Bioconductor version: Development (3.7)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RedeR")

Documentation

HTML R Script RedeR: hierarchical network representation
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version 1.27.0
In Bioconductor since BioC 2.9 (R-2.14) (6 years)
License GPL (>= 2)
Depends R (>= 3.3.3), methods
Imports igraph
LinkingTo
Suggests pvclust, BiocStyle, knitr, rmarkdown
SystemRequirements Java Runtime Environment (>= 6)
Enhances
URL http://genomebiology.com/2012/13/4/R29
Depends On Me Fletcher2013b
Imports Me Mulder2012, PANR, RTN, transcriptogramer
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedeR_1.27.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) RedeR_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RedeR
Package Short Url http://bioconductor.org/packages/RedeR/
Package Downloads Report Download Stats

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