DOI: 10.18129/B9.bioc.RedeR    

This is the development version of RedeR; for the stable release version, see RedeR.

Interactive visualization and manipulation of nested networks

Bioconductor version: Development (3.8)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at>

Citation (from within R, enter citation("RedeR")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
BiocManager::install("RedeR", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script RedeR: hierarchical network representation
PDF   Reference Manual
Text   NEWS


biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version 1.29.0
In Bioconductor since BioC 2.9 (R-2.14) (7 years)
License GPL (>= 2)
Depends R (>= 3.3.3), methods
Imports igraph
Suggests pvclust, BiocStyle, knitr, rmarkdown
SystemRequirements Java Runtime Environment (>= 6)
Depends On Me Fletcher2013b
Imports Me Mulder2012, PANR, RTN, transcriptogramer
Suggests Me
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Follow Installation instructions to use this package in your R session.

Source Package RedeR_1.29.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) RedeR_1.29.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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