To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PANR")

In most cases, you don't need to download the package archive at all.

PANR

 

   

This is the development version of PANR; for the stable release version, see PANR.

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor version: Development (3.4)

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

Author: Xin Wang <xin_wang at hms.harvard.edu>

Maintainer: Xin Wang <xin_wang at hms.harvard.edu>

Citation (from within R, enter citation("PANR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PANR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PANR")

 

PDF R Script Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, Clustering, GraphAndNetwork, NetworkInference, Software, Visualization
Version 1.19.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License Artistic-2.0
Depends R (>= 2.14), igraph
Imports graphics, grDevices, MASS, methods, pvclust, stats, utils, RedeR
LinkingTo
Suggests snow
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me RedeR
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source PANR_1.19.0.tar.gz
Windows Binary PANR_1.19.0.zip
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/PANR
Package Short Url http://bioconductor.org/packages/PANR/
Package Downloads Report Download Stats

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