TreeAndLeaf

DOI: 10.18129/B9.bioc.TreeAndLeaf    

This is the development version of TreeAndLeaf; for the stable release version, see TreeAndLeaf.

Displaying binary trees with focus on dendrogram leaves

Bioconductor version: Development (3.14)

The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.

Author: Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro

Maintainer: Milena A. Cardoso <milenandreuzo at gmail.com>

Citation (from within R, enter citation("TreeAndLeaf")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TreeAndLeaf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeAndLeaf")

 

HTML R Script TreeAndLeaf: an graph layout to dendrograms.
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version 1.5.3
In Bioconductor since BioC 3.11 (R-4.0) (1.5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports RedeR(>= 1.40.4), igraph, ape
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, geneplast, ggtree, ggplot2, dplyr, dendextend, RColorBrewer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TreeAndLeaf_1.5.3.tar.gz
Windows Binary TreeAndLeaf_1.5.3.zip (64-bit only)
macOS 10.13 (High Sierra) TreeAndLeaf_1.5.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/TreeAndLeaf
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TreeAndLeaf
Package Short Url https://bioconductor.org/packages/TreeAndLeaf/
Package Downloads Report Download Stats

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