DOI: 10.18129/B9.bioc.ggtree    

This is the development version of ggtree; for the stable release version, see ggtree.

an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

Bioconductor version: Development (3.7)

'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees with their covariates and other associated data.

Author: Guangchuang Yu [aut, cre, cph] (<>), Tommy Tsan-Yuk Lam [aut, ths], Justin Silverman [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at>

Citation (from within R, enter citation("ggtree")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script 01 ggtree Introduction
HTML R Script 02 Tree Visualization
HTML R Script 03 Tree Manipulation
HTML R Script 04 Tree Annotation
PDF   Reference Manual
Text   NEWS


biocViews Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
Version 1.11.5
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports ape, dplyr, ggplot2 (>= 2.2.0), grDevices, grid, magrittr, methods, rvcheck, scales, tibble, tidyr, tidytree (>= 0.1.5), treeio(>= 1.3.9), utils
Suggests colorspace, cowplot, emojifont, ggimage, knitr, prettydoc, rmarkdown, testthat
Depends On Me
Imports Me LINC, LymphoSeq, philr, roma
Suggests Me treeio
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Source Package ggtree_1.11.5.tar.gz
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