DOI: 10.18129/B9.bioc.compcodeR    

This is the development version of compcodeR; for the stable release version, see compcodeR.

RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods

Bioconductor version: Development (3.7)

This package provides extensive functionality for comparing results obtained by different methods for differential expression analysis of RNAseq data. It also contains functions for simulating count data and interfaces to several packages for performing the differential expression analysis.

Author: Charlotte Soneson

Maintainer: Charlotte Soneson <charlottesoneson at>

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biocViews DifferentialExpression, RNASeq, Software
Version 1.15.0
In Bioconductor since BioC 2.14 (R-3.1) (4 years)
License GPL (>= 2)
Depends R (>= 3.0.2), sm
Imports tcltk, knitr (>= 1.2), markdown, ROCR, lattice (>= 0.16), gplots, gtools, gdata, caTools, grid, KernSmooth, MASS, ggplot2, stringr, modeest, edgeR, limma, vioplot, methods
Suggests BiocStyle, EBSeq, DESeq, DESeq2(>= 1.1.31), baySeq(>= 2.2.0), genefilter, NOISeq, TCC, samr, NBPSeq (>= 0.3.0)
Enhances rpanel, DSS
Depends On Me
Imports Me
Suggests Me
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