NOISeq

Exploratory analysis and differential expression for RNA-seq data

Bioconductor version: Development (3.0)

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

Author: Sonia Tarazona, Pedro Furio-Tari, Alberto Ferrer and Ana Conesa

Maintainer: Sonia Tarazona <starazona at cipf.es>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("NOISeq")

To cite this package in a publication, start R and enter:

    citation("NOISeq")

Documentation

PDF R Script NOISeq User's Guide
PDF QCreport.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, RNASeq, Sequencing, Software, Visualization
Version 2.7.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.13.0), methods, Biobase(>= 2.13.11), splines (>= 3.0.1)
Imports
Suggests
System Requirements
URL
Depends On Me metaSeq
Imports Me metaseqR
Suggests Me compcodeR

Package Downloads

Package Source NOISeq_2.7.0.tar.gz
Windows Binary NOISeq_2.7.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) NOISeq_2.7.0.tgz
Mac OS X 10.9 (Mavericks)
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