To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")

In most cases, you don't need to download the package archive at all.

ggtree

 

   

an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

Bioconductor version: Release (3.4)

'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees with their covariates and other associated data.

Author: Guangchuang Yu and Tommy Tsan-Yuk Lam

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ggtree")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")

Documentation

HTML R Script 00 ggtree introduction
HTML R Script 01 Tree Data Import
HTML R Script 02 Tree Visualization
HTML R Script 03 Tree Manipulation
HTML R Script 04 Tree Annotation
HTML R Script 05 Advance Tree Annotation
HTML R Script 06 ggtree utilities
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
Version 1.6.5
In Bioconductor since BioC 3.1 (R-3.2) (1.5 years)
License Artistic-2.0
Depends R (>= 3.3.1), ggplot2 (>= 2.2.0)
Imports ape, grDevices, grid, jsonlite, magrittr, methods, stats4, tidyr, utils
LinkingTo
Suggests Biostrings, colorspace, EBImage, emojifont, knitr, rmarkdown, scales, testthat
SystemRequirements
Enhances
URL https://guangchuangyu.github.io/ggtree
BugReports https://github.com/GuangchuangYu/ggtree/issues
Depends On Me
Imports Me LINC, philr
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ggtree_1.6.5.tar.gz
Windows Binary ggtree_1.6.5.zip
Mac OS X 10.9 (Mavericks) ggtree_1.6.5.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ggtree/tree/release-3.4
Package Short Url http://bioconductor.org/packages/ggtree/
Package Downloads Report Download Stats

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