To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("treeio")

In most cases, you don't need to download the package archive at all.

treeio

DOI: 10.18129/B9.bioc.treeio    

This is the development version of treeio; for the stable release version, see treeio.

Base Classes and Functions for Phylogenetic Tree Input and Output

Bioconductor version: Development (3.7)

Base classes and functions for parsing and exporting phylogenetic trees. 'treeio' supports parsing analysis findings from commonly used software packages, allows linking exteranl data to phylogeny and merging tree data obtained from different sources. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file.

Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Tommy Tsan-Yuk Lam [aut, ths], Casey Dunn [ctb], Bradley Jones [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("treeio")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("treeio")

Documentation

HTML R Script 01 Importing trees with data
HTML R Script 02 Exporting trees with data
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Annotation, Clustering, DataImport, DataRepresentation, MultipleSequenceAlignment, Software
Version 1.3.11
In Bioconductor since BioC 3.5 (R-3.4) (0.5 years)
License Artistic-2.0
Depends R (>= 3.4.2)
Imports ape, dplyr, jsonlite, magrittr, methods, rvcheck, tibble, tidytree (>= 0.1.6)
LinkingTo
Suggests ggplot2, ggtree, knitr, prettydoc, testthat, tidyr
SystemRequirements
Enhances
URL https://guangchuangyu.github.io/treeio
BugReports https://github.com/GuangchuangYu/treeio/issues
Depends On Me
Imports Me ggtree
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package treeio_1.3.11.tar.gz
Windows Binary treeio_1.3.11.zip
Mac OS X 10.11 (El Capitan) treeio_1.3.11.tgz
Source Repository git clone https://git.bioconductor.org/packages/treeio
Package Short Url http://bioconductor.org/packages/treeio/
Package Downloads Report Download Stats

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