DOI: 10.18129/B9.bioc.rfPred    

Assign rfPred functional prediction scores to a missense variants list

Bioconductor version: Release (3.7)

Based on external numerous data files where rfPred scores are pre-calculated on all genomic positions of the human exome, the package gives rfPred scores to missense variants identified by the chromosome, the position (hg19 version), the referent and alternative nucleotids and the uniprot identifier of the protein. Note that for using the package, the user has to be connected on the Internet or to download the TabixFile and index (approximately 3.3 Go).

Author: Fabienne Jabot-Hanin, Hugo Varet and Jean-Philippe Jais

Maintainer: Hugo Varet <varethugo at gmail.com>

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biocViews Annotation, Classification, Software
Version 1.18.0
In Bioconductor since BioC 2.13 (R-3.0) (4.5 years)
License GPL (>=2 )
Depends Rsamtools, GenomicRanges, IRanges, data.table, methods, parallel
Suggests BiocStyle
URL http://www.sbim.fr/rfPred
Depends On Me
Imports Me
Suggests Me
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Source Package rfPred_1.18.0.tar.gz
Windows Binary rfPred_1.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) rfPred_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rfPred
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rfPred
Package Short Url http://bioconductor.org/packages/rfPred/
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