ggmanh

DOI: 10.18129/B9.bioc.ggmanh    

Visualization Tool for GWAS Result

Bioconductor version: Release (3.15)

Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.

Author: John Lee [aut, cre], Xiuwen Zheng [ctb, dtc]

Maintainer: John Lee <john.lee at abbvie.com>

Citation (from within R, enter citation("ggmanh")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggmanh")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggmanh")

 

HTML R Script Guide to ggmanh Package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Genetics, GenomeWideAssociation, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.15 (R-4.2) (< 6 months)
License MIT + file LICENSE
Depends methods, ggplot2
Imports gdsfmt, ggrepel, grDevices, RColorBrewer, rlang, scales, SeqArray(>= 1.32.0), stats
LinkingTo
Suggests BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0), markdown, GenomicRanges
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me SAIGEgds
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggmanh_1.0.0.tar.gz
Windows Binary ggmanh_1.0.0.zip
macOS Binary (x86_64) ggmanh_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ggmanh
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggmanh
Package Short Url https://bioconductor.org/packages/ggmanh/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive

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