scTHI

DOI: 10.18129/B9.bioc.scTHI    

Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data

Bioconductor version: Release (3.11)

scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.

Author: Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre]

Maintainer: Michele Ceccarelli <m.ceccarelli at gmail.com>

Citation (from within R, enter citation("scTHI")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scTHI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scTHI")

 

HTML R Script Using scTHI
PDF   Reference Manual
Text   NEWS

Details

biocViews SingleCell, Software
Version 1.0.0
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License GPL-2
Depends R (>= 4.0)
Imports BiocParallel, Rtsne, grDevices, graphics, stats
LinkingTo
Suggests scTHI.data, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/miccec/scTHI/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scTHI_1.0.0.tar.gz
Windows Binary scTHI_1.0.0.zip
macOS 10.13 (High Sierra) scTHI_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scTHI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scTHI
Package Short Url https://bioconductor.org/packages/scTHI/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: