scTHI
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data
Bioconductor version: 3.23 · Package version: 1.24.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scTHI")Details
| Maintainer | Michele Ceccarelli <m.ceccarelli@gmail.com> |
| Author | Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre] |
| License | GPL-2 |
| Bug Reports | https://github.com/miccec/scTHI/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/scTHI/ |
Citation
From within R, enter citation("scTHI"):
Francesca Pia Caruso, Michele Ceccarelli. scTHI: Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data. doi:10.18129/B9.bioc.scTHI, R package version 1.24.0, https://bioconductor.org/packages/scTHI.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | scTHI_1.24.0.tar.gz |
| Windows binary (x86_64) | scTHI_1.24.0.zip |
| macOS binary (arm64) | scTHI_1.24.0.tgz |
| macOS binary (x86_64) | scTHI_1.24.0.tgz |
Dependencies
Depends: R (>= 4.0)
Imports: BiocParallel, Rtsne, grDevices, graphics, stats
Suggests: scTHI.data, knitr, rmarkdown, BiocStyle