To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ndexr")

In most cases, you don't need to download the package archive at all.

ndexr

DOI: 10.18129/B9.bioc.ndexr    

NDEx R client library

Bioconductor version: Release (3.6)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Frank Kramer <frank.kramer at med.uni-goettingen.de>, Florian Auer <florian.auer at med.uni-goettingen.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at med.uni-goettingen.de>

Citation (from within R, enter citation("ndexr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ndexr")

Documentation

HTML R Script NDExR Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Network, Pathways, Software
Version 1.0.0
License BSD
Depends igraph
Imports httr, jsonlite, plyr, tidyr
LinkingTo
Suggests BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/frankkramer-lab/ndexr
BugReports https://github.com/frankkramer-lab/ndexr/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ndexr_1.0.0.tar.gz
Windows Binary ndexr_1.0.0.zip
Mac OS X 10.11 (El Capitan) ndexr_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ndexr
Package Short Url http://bioconductor.org/packages/ndexr/
Package Downloads Report Download Stats

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