To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ndexr")

In most cases, you don't need to download the package archive at all.

ndexr

DOI: 10.18129/B9.bioc.ndexr    

This is the development version of ndexr; to use it, please install the devel version of Bioconductor.

NDEx R client library

Bioconductor version: Development (3.6)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Frank Kramer <frank.kramer at med.uni-goettingen.de>, Florian Auer <florian.auer at med.uni-goettingen.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at med.uni-goettingen.de>

Citation (from within R, enter citation("ndexr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ndexr")

Documentation

HTML R Script NDExR Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Network, Pathways, Software
Version 0.99.14
In Bioconductor since BioC 3.6 (R-3.4)
License BSD
Depends igraph
Imports httr, jsonlite, plyr, tidyr
LinkingTo
Suggests BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/frankkramer-lab/ndexr
BugReports https://github.com/frankkramer-lab/ndexr/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ndexr_0.99.14.tar.gz
Windows Binary ndexr_0.99.14.zip
Mac OS X 10.11 (El Capitan) ndexr_0.99.14.tgz
Source Repository git clone https://git.bioconductor.org/packages/ndexr
Package Short Url http://bioconductor.org/packages/ndexr/
Package Downloads Report Download Stats

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