To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("dagLogo")

In most cases, you don't need to download the package archive at all.

dagLogo

 

dagLogo

Bioconductor version: Release (3.1)

Visualize significant conserved amino acid sequence pattern in groups based on probability theory

Author: Jianhong Ou, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Citation (from within R, enter citation("dagLogo")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("dagLogo")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dagLogo")

 

PDF R Script dagLogo Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews SequenceMatching, Software, Visualization
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (1.5 years)
License GPL (>=2)
Depends R (>= 3.0.1), methods, biomaRt, grImport, grid, motifStack
Imports pheatmap, Biostrings
LinkingTo
Suggests XML, UniProt.ws, RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source dagLogo_1.6.0.tar.gz
Windows Binary dagLogo_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) dagLogo_1.6.0.tgz
Mac OS X 10.9 (Mavericks) dagLogo_1.6.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center