To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("dagLogo")

In most cases, you don't need to download the package archive at all.

dagLogo

dagLogo

Bioconductor version: Release (3.0)

Visualize significant conserved amino acid sequence pattern in groups based on probability theory

Author: Jianhong Ou, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Citation (from within R, enter citation("dagLogo")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("dagLogo")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dagLogo")

 

PDF R Script dagLogo Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews SequenceMatching, Software, Visualization
Version 1.4.1
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>=2)
Depends R (>= 3.0.1), methods, biomaRt, grImport, grid, motifStack
Imports pheatmap, Biostrings
Suggests XML, UniProt.ws, RUnit, BiocGenerics, BiocStyle
SystemRequirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source dagLogo_1.4.1.tar.gz
Windows Binary dagLogo_1.4.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) dagLogo_1.4.1.tgz
Mac OS X 10.9 (Mavericks) dagLogo_1.4.1.tgz
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