dagLogo

dagLogo

Bioconductor version: Release (2.14)

Visualize significant conserved amino acid sequence pattern in groups based on probability theory

Author: Jianhong Ou, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("dagLogo")

To cite this package in a publication, start R and enter:

    citation("dagLogo")

Documentation

PDF R Script dagLogo Vignette
PDF   Reference Manual

Details

biocViews GenomicsSequence, SequenceMatching, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>=2)
Depends R (>= 3.0.1), methods, biomaRt, grImport, grid, motifStack
Imports pheatmap, Biostrings
Suggests XML, UniProt.ws, RUnit, BiocGenerics, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source dagLogo_1.2.0.tar.gz
Windows Binary dagLogo_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) dagLogo_1.2.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center