To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("dagLogo")

In most cases, you don't need to download the package archive at all.

dagLogo

dagLogo

Bioconductor version: Release (2.14)

Visualize significant conserved amino acid sequence pattern in groups based on probability theory

Author: Jianhong Ou, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Citation (from within R, enter citation("dagLogo")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("dagLogo")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dagLogo")

 

PDF R Script dagLogo Vignette
PDF   Reference Manual

Details

biocViews GenomicsSequence, SequenceMatching, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>=2)
Depends R (>= 3.0.1), methods, biomaRt, grImport, grid, motifStack
Imports pheatmap, Biostrings
Suggests XML, UniProt.ws, RUnit, BiocGenerics, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source dagLogo_1.2.0.tar.gz
Windows Binary dagLogo_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) dagLogo_1.2.0.tgz
Mac OS X 10.9 (Mavericks) dagLogo_1.2.0.tgz
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