DOI: 10.18129/B9.bioc.motifStack    

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Bioconductor version: Release (3.6)

The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.

Author: Jianhong Ou, Michael Brodsky, Scot Wolfe and Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at>

Citation (from within R, enter citation("motifStack")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script motifStack Vignette
PDF   Reference Manual
Text   NEWS


biocViews Alignment, ChIPSeq, ChIPchip, DataImport, Microarray, MotifAnnotation, SequenceMatching, Sequencing, Software, Visualization
Version 1.22.4
In Bioconductor since BioC 2.11 (R-2.15) (5.5 years)
License GPL (>= 2)
Depends R (>= 2.15.1), methods, grImport, grid, MotIV, ade4, Biostrings
Imports XML, scales, htmlwidgets, grDevices, stats, utils
Suggests RUnit, BiocGenerics, MotifDb, RColorBrewer, BiocStyle, knitr
Depends On Me dagLogo
Imports Me ATACseqQC, LowMACA, motifbreakR
Suggests Me ChIPpeakAnno
Build Report  

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Source Package motifStack_1.22.4.tar.gz
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Mac OS X 10.11 (El Capitan) motifStack_1.22.4.tgz
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Old Source Packages for BioC 3.6 Source Archive

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