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Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Bioconductor version: Release (3.1)

The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.

Author: Jianhong Ou, Michael Brodsky, Scot Wolfe and Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at>

Citation (from within R, enter citation("motifStack")):


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PDF R Script motifStack Vignette
PDF   Reference Manual
Text   NEWS


biocViews Alignment, ChIPSeq, ChIPchip, DataImport, Microarray, MotifAnnotation, SequenceMatching, Sequencing, Software, Visualization
Version 1.12.0
In Bioconductor since BioC 2.11 (R-2.15) (2.5 years)
License GPL (>= 2)
Depends R (>= 2.15.1), methods, grImport, grid, MotIV, ade4, Biostrings
Imports XML
Suggests RUnit, BiocGenerics, MotifDb, RColorBrewer, BiocStyle
Depends On Me dagLogo, LowMACA
Imports Me
Suggests Me
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