To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("motifStack")

In most cases, you don't need to download the package archive at all.

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Bioconductor version: Release (2.14)

The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.

Author: Jianhong Ou, Michael Brodsky, Scot Wolfe and Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Citation (from within R, enter citation("motifStack")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("motifStack")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifStack")

 

PDF R Script motifStack Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews GenomicsSequence, SequenceMatching, Software, Visualization
Version 1.8.1
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>= 2)
Depends R (>= 2.15.1), methods, grImport, grid, MotIV, ade4
Imports XML
Suggests RUnit, BiocGenerics, MotifDb, RColorBrewer, BiocStyle
System Requirements
URL
Depends On Me dagLogo
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source motifStack_1.8.1.tar.gz
Windows Binary motifStack_1.8.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) motifStack_1.8.1.tgz
Mac OS X 10.9 (Mavericks) motifStack_1.8.1.tgz
Browse/checkout source (username/password: readonly)
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