chipseq
chipseq: A package for analyzing chipseq data
Bioconductor version: 3.23 · Package version: 1.62.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Tools for helping process short read data for chipseq experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chipseq")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Deepayan Sarkar [aut], Robert Gentleman [aut], Michael Lawrence [aut], Zizhen Yao [aut], Oluwabukola Bamigbade [ctb] (Converted vignette from Sweave to R Markdown / HTML.), Bioconductor Package Maintainer [cre] |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ChIPSeq, Coverage, DataImport, QualityControl, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/chipseq/ |
Citation
From within R, enter citation("chipseq"):
Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao. chipseq: chipseq: A package for analyzing chipseq data. doi:10.18129/B9.bioc.chipseq, R package version 1.62.0, https://bioconductor.org/packages/chipseq.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | chipseq_1.62.0.tar.gz |
| Windows binary (x86_64) | chipseq_1.62.0.zip |
| macOS binary (arm64) | chipseq_1.62.0.tgz |
| macOS binary (x86_64) | chipseq_1.62.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, BiocGenerics (>= 0.1.0), S4Vectors (>= 0.17.25), IRanges (>= 2.13.12), GenomicRanges (>= 1.31.8), ShortRead
Imports: methods, stats, lattice, BiocGenerics, IRanges, GenomicRanges, ShortRead
Suggests: BSgenome, GenomicFeatures, TxDb.Mmusculus.UCSC.mm9.knownGene, BSgenome.Mmusculus.UCSC.mm9, BiocStyle, knitr