sangerseqR

Tools for Sanger Sequencing Data in R

Bioconductor version: Release (2.14)

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Author: Jonathon T. Hill, Bradley Demarest

Maintainer: Jonathon Hill <jhill at genetics.utah.edu>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("sangerseqR")

Citation (from within R, enter citation("sangerseqR")):

Documentation

PDF R Script sangerseqR
PDF   Reference Manual

Details

biocViews SNP, Sequencing, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-2
Depends R (>= 3.0.2), Biostrings
Imports methods
Suggests BiocStyle, knitr, RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source sangerseqR_1.0.0.tar.gz
Windows Binary sangerseqR_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) sangerseqR_1.0.0.tgz
Mac OS X 10.9 (Mavericks) sangerseqR_1.0.0.tgz
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