ExperimentHub
This is the released version of ExperimentHub; for the devel version, see ExperimentHub.
All Bioconductor versions of ExperimentHub
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4
Client to access ExperimentHub resources
Bioconductor version: 3.23 · Package version: 3.2.2
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
Author: Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation
From within R, enter citation("ExperimentHub"):
Martin Morgan, Lori Shepherd. ExperimentHub: Client to access ExperimentHub resources. doi:10.18129/B9.bioc.ExperimentHub, R package version 3.2.2, https://bioconductor.org/packages/ExperimentHub.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExperimentHub")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 3.2.2 |
| License | Artistic-2.0 |
| URL | https://github.com/Bioconductor/ExperimentHub |
| Bug Reports | https://github.com/Bioconductor/ExperimentHub/issues |
| Last updated | 2026-08-19 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| Downloads rank | 73 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, GUI, Infrastructure, Software, ThirdPartyClient |
| Package Short Url | https://bioconductor.org/packages/ExperimentHub/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExperimentHub")| ExperimentHub: Access the ExperimentHub Web Service | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ExperimentHub_3.2.2.tar.gz |
| Windows binary (x86_64) | ExperimentHub_3.2.2.zip |
| macOS binary (arm64) | ExperimentHub_3.2.2.tgz |
| macOS binary (x86_64) | ExperimentHub_3.2.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ExperimentHub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExperimentHub |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |
Dependencies
Depends: methods, BiocGenerics (>= 0.15.10), AnnotationHub (>= 3.99.3), BiocFileCache (>= 2.99.3)
Imports: utils, S4Vectors, BiocManager, rappdirs
Suggests: knitr, BiocStyle, rmarkdown, HubPub, GenomicAlignments, SingleCellExperiment
Enhances: ExperimentHubData
Reverse dependencies
Depends On Me (51): AWAggregatorData, BeadSorted.Saliva.EPIC, biscuiteerData, bodymapRat, CellMapperData, clustifyrdatahub, CoSIA, CoSIAdata, crisprScoreData, curatedAdipoChIP, CytoMethIC, DMRcatedata, DMRsegaldata, eoPredData, EpiMix.data, ewceData, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, HDCytoData, HiContactsData, HighlyReplicatedRNASeq, HumanAffyData, iSEEhub, LRcell, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, multiWGCNAdata, muscData, muSpaData, NanoporeRNASeq, NestLink, nullrangesData, ObMiTi, octad, octad.db, RNAmodR.Data, scMultiome, scpdata, SeqSQC, sesameData, SimBenchData, SpatialDatasets, spatialDmelxsim, STexampleData, tartare, TENxVisiumData, TENxXeniumData, VectraPolarisData, WeberDivechaLCdata
Imports Me (99): adductData, BiocHubsShiny, BioImageDbs, BloodGen3Module, CBNplot, celldex, CENTREprecomputed, cfToolsData, ChIPDBData, chipseqDBData, CLLmethylation, coMethDMR, CopyNeutralIMA, CTdata, curatedMetagenomicData, curatedPCaData, curatedTBData, curatedTCGAData, DeconvoBuddies, depmap, DMRcate, DoReMiTra, DropletTestFiles, DuoClustering2018, easierData, emtdata, EMTscoreData, ENmix, EpiMix, epimutacions, EpipwR, EpipwR.data, epiregulon, ExperimentHubData, FieldEffectCrc, gDNAinRNAseqData, GenomicDistributionsData, GSEABenchmarkeR, HarmonizedTCGAData, HCAData, HCATonsilData, HMP16SData, HMP2Data, hpar, humanHippocampus2024, imcdatasets, iModMix, iModMixData, JohnsonKinaseData, knowYourCG, LRcellTypeMarkers, m6Aboost, MACSr, marinerData, MatrixQCvis, MerfishData, methodical, MethReg, methylclock, methylclockData, MethylSeqData, microbiomeDataSets, Moonlight2R, MouseAgingData, MouseGastrulationData, MouseThymusAgeing, MsDataHub, msigdb, nmrdata, NxtIRFdata, orthos, orthosData, PhyloProfileData, postNet, preciseTADhub, ProteinGymR, raerdata, scaeData, scRNAseq, SFEData, shinyDSP, signatureSearch, signatureSearchData, SingleCellMultiModal, singleCellTK, SingleMoleculeFootprintingData, spatialFDA, spatialLIBD, TabulaMurisData, TabulaMurisSenisData, TENET, TENET.ExperimentHub, TENxBrainData, TENxBUSData, TENxPBMCData, TFEA.ChIP, tuberculosis, TumourMethData, xcoredata
Suggests Me (55): AlphaMissenseR, ANF, AnnotationHub, AWAggregator, bambu, Banksy, BioPlex, celaref, celarefData, CellMapper, crumblr, curatedAdipoArray, DeeDeeExperiment, DEqMS, DESpace, dreamlet, easyEWAS, ELMER, epimutacionsData, genomicInstability, GSE103322, GSE13015, GSE159526, GSE62944, GSVA, h5mread, HDF5Array, HVP, jazzPanda, mariner, metabom8, missMethyl, MsBackendRawFileReader, muleaData, multiWGCNA, muscat, MutSeqR, nullranges, planet, quantiseqr, rawDiag, rawrr, recountmethylation, smokingMouse, sosta, SparseArray, SPOTlight, standR, SubcellularSpatialData, TCGAbiolinks, TENxIO, tissueTreg, TransOmicsData, Voyager, xcore