ExperimentHub
DOI:
10.18129/B9.bioc.ExperimentHub
Client to access ExperimentHub resources
Bioconductor version: Release (3.18)
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
Author: Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("ExperimentHub")
):
Installation
To install this package, start R (version
"4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExperimentHub")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("ExperimentHub")
HTML
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R Script
|
ExperimentHub: Access the ExperimentHub Web Service |
PDF
|
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Reference Manual |
Text
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NEWS |
Details
biocViews |
DataImport, GUI, Infrastructure, Software, ThirdPartyClient |
Version |
2.10.0 |
In Bioconductor since |
BioC 3.4 (R-3.3) (7 years) |
License |
Artistic-2.0 |
Depends |
methods, BiocGenerics(>= 0.15.10), AnnotationHub(>= 3.3.6), BiocFileCache(>= 1.5.1) |
Imports |
utils, S4Vectors, BiocManager, rappdirs |
LinkingTo |
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Suggests |
knitr, BiocStyle, rmarkdown, HubPub, GenomicAlignments |
SystemRequirements |
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Enhances |
ExperimentHubData |
URL |
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BugReports |
https://github.com/Bioconductor/ExperimentHub/issues |
Depends On Me |
adductomicsR, BeadSorted.Saliva.EPIC, benchmarkfdrData2019, biscuiteerData, bodymapRat, CellMapperData, clustifyrdatahub, CoSIA, CoSIAdata, crisprScoreData, curatedAdipoChIP, DMRcatedata, EpiMix.data, ewceData, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, HDCytoData, HiContactsData, HighlyReplicatedRNASeq, HumanAffyData, iSEEhub, LRcell, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, multiWGCNAdata, muscData, NanoporeRNASeq, NestLink, nullrangesData, ObMiTi, octad, octad.db, restfulSEData, RNAmodR.Data, SCATEData, scMultiome, scpdata, SeqSQC, sesameData, SimBenchData, SpatialDatasets, spatialDmelxsim, STexampleData, tartare, TENxVisiumData, VectraPolarisData, WeberDivechaLCdata |
Imports Me |
adductData, BiocHubsShiny, BioImageDbs, BloodGen3Module, CBNplot, celldex, cfToolsData, chipseqDBData, CLLmethylation, coMethDMR, CopyNeutralIMA, CTdata, curatedMetagenomicData, curatedTBData, curatedTCGAData, depmap, DMRcate, DropletTestFiles, DuoClustering2018, easierData, emtdata, ENmix, EpiMix, epimutacions, ExperimentHubData, FieldEffectCrc, gDNAinRNAseqData, GenomicDistributionsData, GSEABenchmarkeR, HarmonizedTCGAData, HCAData, HCATonsilData, HMP16SData, HMP2Data, hpar, imcdatasets, LRcellTypeMarkers, m6Aboost, MACSr, marinerData, MatrixQCvis, MerfishData, MethReg, methylclock, methylclockData, MethylSeqData, microbiomeDataSets, MouseGastrulationData, MouseThymusAgeing, MsDataHub, msigdb, NxtIRFdata, orthos, orthosData, PhyloProfile, PhyloProfileData, preciseTADhub, pwrEWAS.data, raerdata, restfulSE, RLHub, scRNAseq, SFEData, signatureSearch, signatureSearchData, SingleCellMultiModal, singleCellTK, SingleMoleculeFootprintingData, spatialLIBD, TabulaMurisData, TabulaMurisSenisData, TENxBrainData, TENxBUSData, TENxPBMCData, tuberculosis, TumourMethData, xcoredata |
Suggests Me |
ANF, AnnotationHub, bambu, BioPlex, celaref, celarefData, CellMapper, curatedAdipoArray, DEqMS, DESpace, dreamlet, ELMER, epimutacionsData, genomicInstability, GSE103322, GSE13015, GSE159526, GSE62944, HDF5Array, mariner, missMethyl, MsBackendRawFileReader, multiWGCNA, muscat, nullranges, quantiseqr, rawrr, recountmethylation, SingleMoleculeFootprinting, smokingMouse, SPOTlight, standR, TCGAbiolinks, TENxIO, tissueTreg, Voyager, xcore |
Links To Me |
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Build Report |
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Package Archives
Follow
Installation instructions to use this
package in your R session.