SpatialDatasets

DOI: 10.18129/B9.bioc.SpatialDatasets  

Collection of spatial omics datasets

Bioconductor version: Release (3.18)

This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.

Author: Farhan Ameen [aut], Nick Robertson [aut], Alex Qin [aut], Elijah Willie [aut], Ellis Patrick [aut, cre]

Maintainer: Ellis Patrick <ellis.patrick at sydney.edu.au>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SpatialDatasets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SpatialDatasets")

 

HTML	R Script	The SpatialDataset package
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData
Version	1.0.0
License	GPL-3
Depends	ExperimentHub, SpatialExperiment
Imports	utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/SydneyBioX/SpatialDatasets
BugReports	https://github.com/SydneyBioX/SpatialDatasets/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SpatialDatasets_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SpatialDatasets
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SpatialDatasets
Package Short Url	https://bioconductor.org/packages/SpatialDatasets/
Package Downloads Report	Download Stats