TENxBrainData

This is the released version of TENxBrainData; for the devel version, see TENxBrainData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Data from the 10X 1.3 Million Brain Cell Study

Bioconductor version: Release (3.23)

Single-cell RNA-seq data for 1.3 million brain cells from E18 mice, generated by 10X Genomics.

Author: Aaron Lun [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TENxBrainData")):

Aaron Lun, Martin Morgan. TENxBrainData: Data from the 10X 1.3 Million Brain Cell Study. doi:10.18129/B9.bioc.TENxBrainData, R package version 1.32.0, https://bioconductor.org/packages/TENxBrainData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxBrainData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBrainData")

Exploring the 1.3 million brain cell scRNA-seq data from 10X Genomics	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version	1.32.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	CC BY 4.0
Depends	SingleCellExperiment, HDF5Array
Imports	AnnotationHub (>= 2.9.22), ExperimentHub
System Requirements
URL

Suggests	knitr, BiocStyle, snow, BiocFileCache, BiocParallel, data.table, rmarkdown
Linking To
Enhances
Depends On Me	OSCA.advanced
Imports Me
Suggests Me	h5mread, HDF5Array
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TENxBrainData_1.32.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TENxBrainData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TENxBrainData
Package Short Url	https://bioconductor.org/packages/TENxBrainData/
Package Downloads Report	Download Stats