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TENxIO

This is the released version of TENxIO; for the devel version, see TENxIO.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16

Import methods for 10X Genomics files

DOI: 10.18129/B9.bioc.TENxIO

Bioconductor version: Release (3.23)

Provides a structured S4 approach to importing data files from the 10X pipelines. It mainly supports Single Cell Multiome ATAC + Gene Expression data among other data types. The main Bioconductor data representations used are SingleCellExperiment and RaggedExperiment.

Author: Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , NCI [fnd] (GrantNo.: U24CA289073)

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("TENxIO")):

Marcel Ramos. TENxIO: Import methods for 10X Genomics files. doi:10.18129/B9.bioc.TENxIO, R package version 1.14.0, https://bioconductor.org/packages/TENxIO.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxIO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxIO")

Details

Package Archives

Follow Installation instructions to use this package in your R session.