TENET.ExperimentHub
Experiment data for the TENET package
Bioconductor version: 3.23 · Package version: 1.4.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
ExperimentHub package containing datasets for use in the TENET package's vignette and function examples. These include a variety of different objects to illustrate different datasets used in TENET functions. Where applicable, all datasets are aligned to the hg38 human genome.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TENET.ExperimentHub")Details
| Maintainer | Rhie Lab at the University of Southern California <rhielab@gmail.com> |
| Author | Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] (ORCID: <https://orcid.org/0000-0002-7639-0549>), Zexun Wu [aut] (ORCID: <https://orcid.org/0000-0003-2566-1326>), Ethan Nelson-Moore [aut] (ORCID: <https://orcid.org/0009-0001-6903-9232>), Suhn Rhie [aut] (ORCID: <https://orcid.org/0000-0002-5522-5296>) |
| License | GPL-2 |
| URL | https://github.com/rhielab/TENET.ExperimentHub |
| Bug Reports | https://github.com/rhielab/TENET.ExperimentHub/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | BreastCancerData, CancerData, CellCulture, ExperimentData, ExperimentHub, ExpressionData, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, RNASeqData, Tissue |
| Package Short Url | https://bioconductor.org/packages/TENET.ExperimentHub/ |
Citation
From within R, enter citation("TENET.ExperimentHub"):
Daniel Mullen, Zexun Wu, Ethan Nelson-Moore, Suhn Rhie. TENET.ExperimentHub: Experiment data for the TENET package. doi:10.18129/B9.bioc.TENET.ExperimentHub, R package version 1.4.0, https://bioconductor.org/packages/TENET.ExperimentHub.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | TENET.ExperimentHub_1.4.0.tar.gz |
Dependencies
Depends: R (>= 4.5), ggplot2 (>= 4.0)
Imports: ExperimentHub, SummarizedExperiment, MultiAssayExperiment, GenomicRanges, methods
Suggests: TENET, ExperimentHubData, testthat (>= 3.0.0), BiocManager, knitr, rmarkdown, BiocStyle
Reverse dependencies
Imports Me (1): TENET