MsDataHub

This is the released version of MsDataHub; for the devel version, see MsDataHub.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

Mass Spectrometry Data on ExperimentHub

Bioconductor version: Release (3.23)

The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.

Author: Laurent Gatto [aut, cre] ORCID: 0000-0002-1520-2268 , Kristina Gomoryova [ctb] ORCID: 0000-0003-4407-3917 , Johannes Rainer [aut] ORCID: 0000-0002-6977-7147 , Guillaume Deflandre [ctb] ORCID: 0009-0008-1257-2416

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("MsDataHub")):

Laurent Gatto, Johannes Rainer. MsDataHub: Mass Spectrometry Data on ExperimentHub. doi:10.18129/B9.bioc.MsDataHub, R package version 1.12.1, https://bioconductor.org/packages/MsDataHub.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsDataHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsDataHub")

Mass Spectrometry Data on ExperimentHub	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentHubSoftware, MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.12.1
In Bioconductor since	BioC 3.17 (R-4.3) (3.5 years)
License	Artistic-2.0
Depends
Imports	ExperimentHub, utils
System Requirements
URL	https://rformassspectrometry.github.io/MsDataHub
Bug Reports	https://github.com/RforMassSpectrometry/MsDataHub/issues

Suggests	ExperimentHubData, DT, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), Spectra, mzR, PSMatch, QFeatures (>= 1.13.3)
Linking To
Enhances
Depends On Me
Imports Me	MsQuality
Suggests Me	MetaboAnnotation, MetaboAnnotatoR, MsBackendSql, MsExperiment, MSnbase, msqrob2, mzR, PSMatch, QFeatures, scp, Spectra, SpectraQL, SpectriPy, xcms
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MsDataHub_1.12.1.tar.gz
Windows Binary (x86_64)	MsDataHub_1.12.1.zip
macOS Binary (big-sur-x86_64)	MsDataHub_1.12.1.tgz
macOS Binary (sonoma-arm64)	MsDataHub_1.12.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MsDataHub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MsDataHub
Package Short Url	https://bioconductor.org/packages/MsDataHub/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.23	Source Archive