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Ramos, M, et al. (2017) Software for the Integration of Multiomics Experiments in Bioconductor Cancer Research 77:e39-e42. doi:10.1158/0008-5472.CAN-17-0344
Pasolli, E, et al. (2017) Accessible, curated metagenomic data through ExperimentHub Nature Methods 14, 1023–1024. doi:10.1038/nmeth.4468
Huber W, et al. (2015) Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods 12:115-121; doi:10.1038/nmeth.3252 (full-text free with registration).
Lawrence M, Huber W, Pagès H, Aboyoun P, Carlson M, et al. (2013) Software for Computing and Annotating Genomic Ranges. PLoS Comput Biol 9(8): e1003118. doi: 10.1371/journal.pcbi.1003118
Irizarry R, et al. (2015) Biomedical Data Science. Course Notes, EdX PH525.1x.

Recent

20 most recent PubMed and PubMed Central citations mentioning "Bioconductor". For a complete list, go to PubMed and PubMed Central. Last updated 2018-09-22T14:20:07-04:00.

Page CM, Vos L, Rounge TB, Harbo HF, Andreassen BK. Assessing genome-wide significance for the detection of differentially methylated regions. Stat Appl Genet Mol Biol. doi:10.1515/sagmb-2017-0050 (19 September 2018)
Rabaglino MB, Keller-Wood M, Wood CE. A transcriptomics model of estrogen action in the ovine fetal hypothalamus: evidence for estrogenic effects of ICI 182,780. Physiol Rep, 6(18), pp. e13871. doi:10.14814/phy2.13871 (18 September 2018)
Fabre PJ, Leleu M, Mascrez B, Lo Giudice Q, Cobb J, Duboule D. Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development BMC Biol, 16, pp. 101. doi:10.1186/s12915-018-0570-z (18 September 2018)
Yang HB, Jiang J, Li LL, Yang HQ, Zhang XY. Biomarker identification of thyroid associated ophthalmopathy using microarray data Int J Ophthalmol, 11(9), pp. 1482-1488. doi:10.18240/ijo.2018.09.09 (18 September 2018)
Borys S, Ludwig-Slomczynska AH, Seweryn M, Hohendorff J, Koblik T, Machlowska J, Kiec-Wilk B, Wolkow P, Malecki MT. Negative pressure wound therapy in the treatment of diabetic foot ulcers may be mediated through differential gene expression. Acta Diabetol. doi:10.1007/s00592-018-1223-y (17 September 2018)
Peripolli E, Metzger J, de Lemos MV, Stafuzza NB, Kluska S, Olivieri BF, Feitosa FL, Berton MP, Lopes FB, Munari DP, Lôbo RB, Magnabosco CD, Di Croce F, Osterstock J, Denise S, Pereira AS, Baldi F. Autozygosity islands and ROH patterns in Nellore lineages: evidence of selection for functionally important traits BMC Genomics, 19, pp. 680. doi:10.1186/s12864-018-5060-8 (17 September 2018)
Johnson EK, Matkovich SJ, Nerbonne JM. Regional Differences in mRNA and lncRNA Expression Profiles in Non-Failing Human Atria and Ventricles Sci Rep, 8, pp. 13919. doi:10.1038/s41598-018-32154-2 (17 September 2018)
Ulanska-Poutanen J, Mieczkowski J, Zhao C, Konarzewska K, Kaza B, Pohl HB, Bugajski L, Kaminska B, Franklin RJ, Zawadzka M. Injury-induced perivascular niche supports alternative differentiation of adult rodent CNS progenitor cells eLife, 7, pp. e30325. doi:10.7554/eLife.30325 (17 September 2018)
Li S, Xuan Y, Gao B, Sun X, Miao S, Lu T, Wang Y, Jiao W. Identification of an eight-gene prognostic signature for lung adenocarcinoma Cancer Manag Res, 10, pp. 3383-3392. doi:10.2147/CMAR.S173941 (10 September 2018)
Kolundzic E, Ofenbauer A, Bulut SI, Uyar B, Baytek G, Sommermeier A, Seelk S, He M, Hirsekorn A, Vucicevic D, Akalin A, Diecke S, Lacadie SA, Tursun B. FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells Dev Cell, 46(5), pp. 611-626.e12. doi:10.1016/j.devcel.2018.07.006 (10 September 2018)
La Greca A, Solari C, Furmento V, Lombardi A, Biani MC, Aban C, Moro L, García M, Guberman AS, Sevlever GE, Miriuka SG, Luzzani C. Extracellular vesicles from pluripotent stem cell-derived mesenchymal stem cells acquire a stromal modulatory proteomic pattern during differentiation Exp Mol Med, 50(9), pp. 119. doi:10.1038/s12276-018-0142-x (10 September 2018)
Wang C, Ha X, Li W, Xu P, Zhang Z, Wang T, Li J, Wang Y, Li S, Xie J, Zhang J. Comparative gene expression profile and DNA methylation status in diabetic patients of Kazak and Han people Medicine (Baltimore), 97(36), pp. e11982. doi:10.1097/MD.0000000000011982 (7 September 2018)
Davis Armstrong NM, Chen WM, Brewer MS, Williams SR, Sale MM, Worrall BB, Keene KL. Epigenome-Wide Analyses Identify Two Novel Associations With Recurrent Stroke in the Vitamin Intervention for Stroke Prevention Clinical Trial Front Genet, 9, pp. 358. doi:10.3389/fgene.2018.00358 (6 September 2018)
Xia L, Wang H, Cai S, Su X, Shen J, Meng Q, Chen Y, Li L, Yan J, Zhang C, Xu M. Integrated Analysis of a Competing Endogenous RNA Network Revealing a Prognostic Signature for Cervical Cancer Front Oncol, 8, pp. 368. doi:10.3389/fonc.2018.00368 (6 September 2018)
Sales G, Calura E, Romualdi C. metaGraphite - a new layer of pathway annotation to get metabolite networks. Bioinformatics. doi:10.1093/bioinformatics/bty719 (4 September 2018)
Risso D, Purvis L, Fletcher RB, Das D, Ngai J, Dudoit S, Purdom E. clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets. PLoS Comput Biol, 14(9), pp. e1006378. doi:10.1371/journal.pcbi.1006378 (4 September 2018)
Norton GJ, Travis AJ, Douglas A, Fairley S, Alves ED, Ruang-areerate P, Naredo ME, McNally KL, Hossain M, Islam MR, Price AH. Genome Wide Association Mapping of Grain and Straw Biomass Traits in the Rice Bengal and Assam Aus Panel (BAAP) Grown Under Alternate Wetting and Drying and Permanently Flooded Irrigation Front Plant Sci, 9, pp. 1223. doi:10.3389/fpls.2018.01223 (3 September 2018)
Hu Z, Glicksberg BS, Butte AJ. Robust prediction of clinical outcomes using cytometry data. Bioinformatics. doi:10.1093/bioinformatics/bty768 (31 August 2018)
Jin C, Kang H, Ryu JR, Kim S, Zhang Y, Lee Y, Kim Y, Han K. Integrative Brain Transcriptome Analysis Reveals Region-Specific and Broad Molecular Changes in Shank3-Overexpressing Mice Front Mol Neurosci, 11, pp. 250. doi:10.3389/fnmol.2018.00250 (31 August 2018)
Terrigno M, Bertacchi M, Pandolfini L, Baumgart M, Calvello M, Cellerino A, Studer M, Cremisi F. The microRNA miR-21 Is a Mediator of FGF8 Action on Cortical COUP-TFI Translation Stem Cell Reports, 11(3), pp. 756-769. doi:10.1016/j.stemcr.2018.08.002 (30 August 2018)

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