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Recent Commits

Last 10 commit to Bioconductor release:

ENmix	2026-06-18 11:07:32 -0400
scECODA	2026-06-17 14:53:46 +0200
GraphExperiment	2026-06-17 09:50:57 +0200
igblastr	2026-06-16 18:43:39 -0700
KEGGREST	2026-06-16 14:40:48 -0400
Glimma	2026-06-16 11:02:14 +1000
BgeeCall	2026-06-15 21:38:41 +0200
ExperimentHub	2026-06-15 13:50:44 -0400
AnnotationHub	2026-06-15 13:53:33 -0400
scDblFinder	2026-06-15 18:14:20 +0200

Last 10 commit to Bioconductor devel:

ENmix	2026-06-18 11:05:09 -0400
MeLSI	2026-06-17 16:23:49 -0500
SynExtend	2026-06-18 13:00:17 +0100
scifer	2026-06-18 13:45:20 +0200
Pedixplorer	2026-06-18 12:17:16 +0200
MsBackendMetaboLights	2026-06-18 07:59:56 +0200
gDRstyle	2026-06-18 08:04:43 +0200
netboost	2026-06-17 16:13:39 +0200
scECODA	2026-06-17 15:47:32 +0200
TSENAT	2026-06-17 14:22:17 +0200

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Newest Packages

Software Packages

iSEEid	iSEE extension to assist in identifying sets of samples/cells
pgen2gds	Format Conversion from PLINK2 PGEN to GDS
KEGGemUP	Creating, Rendering, and Mapping Omics Data on KEGG Pathway Graphs
cellNexus	Queries the Human Cell Atlas
daVis	Visualization Of Differential Expression Analysis
MultipleAlignment	Representation of multiple sequence alignments in Bioconductor
TSENAT	Tsallis Entropy Analysis Toolbox
immGLIPH	Grouping of Lymphocyte Interactions by Paratope Hotspots
PinPath	Visualization of Omics Data on Pathway Diagrams
MSTree	MSTree plotting minimum spanning tree directly from the output of ChewBBACA pipeline

Experiment Data Packages

HumanRetinaLRSData	Long-read RNA-seq gene count data from human retinal organoids
DMRsegaldata	Example DNAm Data for DMRsegal
curatedCRCData	Colorectal Cancer Gene Expression Analysis
EMTscoreData	Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)
MutSeqRData	Experimental Data for MutSeqR Examples
dominatRData	Datasets for R Package dominatR
DoReMiTra	Orchestrating Blood Radiation Transcriptomic Data
nmrdata	Example 1d NMR Data for Metabolic Profiling
ChIPDBData	ChIP-seq Target Databases for TFEA.ChIP
iModMixData	Data for iModMix Package

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Single Package Builder

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Recent Submissions

multipointR

pepitope

MOTL

loopcityData

sciNOME

gdscloud

dbSequence

LIPIDIFy

CMEnt

polyICSFlow

rvarsim

MultiOmicsBridge

scCompoundDE

IntegratedLearner

DAssemble

epiwraps

Sbivar

PlantTxDbHub

MetaPathNet

geneslator

Recent Builds

CycleMix	2026-06-18T16:15:29
mesa	2026-06-17T14:56:35
spammR	2026-06-12T15:30:31
spammR	2026-06-11T23:50:33
CGRphylo2	2026-06-11T23:24:34
mesa	2026-06-11T15:38:49
EMTscore	2026-06-10T01:51:33
DaparToolshedData	2026-06-09T14:21:33
DaparToolshedData	2026-06-09T14:09:45
DaparToolshedData	2026-06-09T13:28:20
CLAMPData	2026-06-08T18:08:12
CLAMP	2026-06-08T18:08:04
scBatchQC	2026-06-08T07:05:04
PostChicago	2026-06-05T14:41:17
pgen2gds	2026-06-05T13:53:09
Fancy	2026-06-04T14:32:19
Fancy	2026-06-04T06:54:15
scFastDE	2026-06-04T06:53:54
CycleMix	2026-05-31T03:52:18
CLAMP	2026-05-29T08:06:11

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Mirror Status

Last updated 2026-06-17T18:03:50-04:00. (Will be updated every 24 hours).

To use a Bioconductor mirror use the R function `chooseBioCmirror()`

URL	Mirror	Release	Devel
https://bioconductor.org/	yes	yes	yes
https://bioconductor.posit.co/	yes	yes	yes
https://bioconductor.statistik.tu-dortmund.de/	yes	yes	yes
https://ftp.gwdg.de/pub/misc/bioconductor/	yes	yes	yes
https://bioconductor.riken.jp/	yes	yes	yes
https://free.nchc.org.tw/bioconductor/	yes	no	no
https://mirrors.tuna.tsinghua.edu.cn/bioconductor/	yes	yes	yes
https://mirrors.nju.edu.cn/bioconductor/	yes	yes	yes
https://mirrors.ustc.edu.cn/bioc/	yes	yes	yes
https://mirrors.westlake.edu.cn/bioconductor	yes	yes	no
https://mirrors.zju.edu.cn/bioconductor	yes	yes	yes
https://bioconductor.uib.no/	yes	no	no
https://bioconductor.unipi.it	yes	no	no
https://cran.asia	yes	yes	yes
https://mirror.aarnet.edu.au/pub/bioconductor	yes	no	no
https://mirrors.dotsrc.org/bioconductor/	yes	yes	yes
https://mirror.accum.se/mirror/bioconductor.org/	yes	yes	yes

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