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Recent Commits

Last 10 commit to Bioconductor release:

beadarray	2026-07-07 13:57:25 +0100
SingleR	2026-07-07 19:00:16 +1000
crumblr	2026-07-06 12:29:54 -0400
BgeeCall	2026-07-06 14:17:12 +0200
MassSpecWavelet	2026-07-06 07:25:53 +0200
xcms	2026-07-05 13:57:41 +0200
RFLOMICS	2026-07-05 12:13:59 +0200
CoSIA	2026-07-02 14:45:44 -0500
TCGAutils	2026-07-02 15:25:56 -0400
flowGate	2026-07-02 16:06:43 -0300

Last 10 commit to Bioconductor devel:

raer	2026-07-07 08:35:23 -0600
blase	2026-07-07 17:01:41 +0300
beadarray	2026-07-07 14:09:44 +0100
quantiseqr	2026-07-07 14:08:07 +0200
GBScleanR	2026-07-07 20:27:19 +0900
MultipleAlignment	2026-07-07 04:05:58 -0700
BiocGenerics	2026-07-07 03:53:50 -0700
FLAMES	2026-06-26 17:17:06 +1000
SingleR	2026-07-07 19:00:16 +1000
scDblFinder	2026-07-07 10:04:09 +0200

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Newest Packages

Software Packages

dbSequence	.
CGRphylo2	Chaos Game Representation for Phylogenetic Analysis
scBatchQC	Batch-Aware Cell Quality Control for Single-Cell RNA-seq
scFastDE	Fast Donor-Weighted Pseudo-Bulk Differential Expression for scRNA-seq
gesel	Search for Interesting Gene Sets
EMMA	EMMA: Enrichment Methods Matter for enabling fully reproducible and provenance-aware pathway analysis
CLAMP	Curated Latent-variable Analysis with Molecular Priors
BenchHub	Comprehensive Collection of Curated Benchmarking Datasets and their Evaluation
PostChicago	PostChicago - visualization and integration of Capture-(Hi)C data
iSEEid	iSEE extension to assist in identifying sets of samples/cells

Experiment Data Packages

CLAMPData	Experiment data for CLAMP package
HumanRetinaLRSData	Long-read RNA-seq gene count data from human retinal organoids
DMRsegaldata	Example DNAm Data for DMRsegal
curatedCRCData	Colorectal Cancer Gene Expression Analysis
EMTscoreData	Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)
MutSeqRData	Experimental Data for MutSeqR Examples
dominatRData	Datasets for R Package dominatR
DoReMiTra	Orchestrating Blood Radiation Transcriptomic Data
nmrdata	Example 1d NMR Data for Metabolic Profiling
ChIPDBData	ChIP-seq Target Databases for TFEA.ChIP

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Single Package Builder

All Current Submissions

Recent Submissions

faissR package

fastPLS package

GSE142512

GSE280465

inferRecom

PTMsToPathwaysData

scCertify - Explainable confidence scoring framework for single-cell RNA-seq cell annotations

MsBackendMetabolomicsWorkbench

SwitchClass

tTEscanR

WOVEN

consensusTADs

MsStash - serializing/restoring MS data object in a language agnostic format

GPlinksR

scOverlay

karioCaS

CySA

reglScatterplotR

PACMOSData

multipointR

Recent Builds

GExPipe	2026-07-07T12:30:35
GExPipe	2026-07-07T11:56:05
GExPipe	2026-07-07T10:30:10
GSEAlens	2026-07-06T18:25:21
RBPSpecificity	2026-07-05T00:18:28
RBPSpecificity	2026-07-04T23:59:05
RBPEqBind	2026-07-04T20:09:49
RBPEqBind	2026-07-04T19:56:32
ProteinBatcher	2026-07-03T08:46:21
TraianProt	2026-07-02T13:08:44
barmixR	2026-06-27T20:08:26
OmniAgeRData	2026-06-27T11:28:52
OmniAgeR	2026-06-27T11:25:10
OmniAgeR	2026-06-26T17:31:26
mesa	2026-06-26T12:09:45
GExPipe	2026-06-22T11:32:29
GExPipe	2026-06-22T11:17:06
GExPipe	2026-06-22T10:52:10
GExPipe	2026-06-22T10:43:51
GExPipe	2026-06-22T10:18:21

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Mirror Status

Last updated 2026-07-06T13:05:11-04:00. (Will be updated every 24 hours).

To use a Bioconductor mirror use the R function `chooseBioCmirror()`

URL	Mirror	Release	Devel
https://bioconductor.org/	yes	yes	yes
https://bioconductor.posit.co/	yes	yes	yes
https://bioconductor.statistik.tu-dortmund.de/	yes	yes	yes
https://ftp.gwdg.de/pub/misc/bioconductor/	yes	yes	yes
https://bioconductor.riken.jp/	yes	yes	yes
https://free.nchc.org.tw/bioconductor/	no	no	no
https://mirrors.tuna.tsinghua.edu.cn/bioconductor/	yes	yes	yes
https://mirrors.nju.edu.cn/bioconductor/	yes	yes	yes
https://mirrors.ustc.edu.cn/bioc/	yes	yes	yes
https://mirrors.westlake.edu.cn/bioconductor	yes	yes	no
https://mirrors.zju.edu.cn/bioconductor	yes	yes	yes
https://bioconductor.uib.no/	yes	no	no
https://bioconductor.unipi.it	yes	no	no
https://cran.asia	yes	yes	yes
https://mirror.aarnet.edu.au/pub/bioconductor	yes	no	no
https://mirrors.dotsrc.org/bioconductor/	yes	yes	yes
https://mirror.accum.se/mirror/bioconductor.org/	yes	yes	yes

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