MsDataHub
This is the development version of MsDataHub; for the stable release version, see MsDataHub.
All Bioconductor versions of MsDataHub
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17
Mass Spectrometry Data on ExperimentHub
Bioconductor version: 3.24 · Package version: 1.13.3
The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.
Author: Laurent Gatto [aut, cre] 
, Kristina Gomoryova [ctb] , Johannes Rainer [aut] , Guillaume Deflandre [ctb]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
Citation
From within R, enter citation("MsDataHub"):
Laurent Gatto, Johannes Rainer. MsDataHub: Mass Spectrometry Data on ExperimentHub. doi:10.18129/B9.bioc.MsDataHub, R package version 1.13.3, https://bioconductor.org/packages/MsDataHub.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MsDataHub")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.13.3 |
| License | Artistic-2.0 |
| URL | https://rformassspectrometry.github.io/MsDataHub |
| Bug Reports | https://github.com/RforMassSpectrometry/MsDataHub/issues |
| Last updated | 2026-10-02 |
| In Bioconductor since | BioC 3.17 (R-4.3) (3 years) |
| Downloads rank | 1339 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentHubSoftware, MassSpectrometry, Metabolomics, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/MsDataHub/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsDataHub")| Mass Spectrometry Data on ExperimentHub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MsDataHub_1.13.3.tar.gz |
| Windows binary (x86_64) | MsDataHub_1.13.3.zip |
| macOS binary (arm64) | MsDataHub_1.13.3.tgz |
| macOS binary (x86_64) | MsDataHub_1.13.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MsDataHub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsDataHub |
| Package Downloads Report | Download Stats |
Dependencies
Imports: ExperimentHub, utils
Suggests: ExperimentHubData, DT, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), Spectra, mzR, PSMatch, QFeatures (>= 1.13.3)
Reverse dependencies
Imports Me (1): MsQuality
Suggests Me (16): Chromatograms, MetaboAnnotation, MetaboAnnotatoR, MsBackendSql, MsExperiment, MSnbase, msqrob2, mzR, PSMatch, QFeatures, scp, Spectra, SpectraQL, SpectraStash, SpectriPy, xcms