scMultiome
Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets
Bioconductor version: 3.23 · Package version: 1.12.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scMultiome")Details
| Maintainer | Xiaosai Yao <xiaosai.yao@gmail.com> |
| Author | Xiaosai Yao [cre, aut] (ORCID: <https://orcid.org/0000-0001-9729-0726>), Aleksander Chlebowski [aut], Aaron Lun [aut], Shiqi Xie [ctb], Tomasz Włodarczyk [aut] |
| License | CC BY-SA 4.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellCulture, ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, PackageTypeData, SequencingData, SingleCellData, Tissue |
| Package Short Url | https://bioconductor.org/packages/scMultiome/ |
Citation
From within R, enter citation("scMultiome"):
Xiaosai Yao, Aleksander Chlebowski, Aaron Lun, Tomasz Włodarczyk. scMultiome: Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets. doi:10.18129/B9.bioc.scMultiome, R package version 1.12.0, https://bioconductor.org/packages/scMultiome.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | scMultiome_1.12.0.tar.gz |
Dependencies
Depends: AnnotationHub, ExperimentHub (>= 2.8.1), MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment
Imports: AzureStor, GenomicRanges, HDF5Array, S4Vectors, checkmate, methods, rhdf5, alabaster.matrix
Suggests: BiocGenerics, IRanges, Matrix, knitr, rmarkdown, rstudioapi, testthat (>= 3.0.0), devtools, BiocStyle, ExperimentHubData
Reverse dependencies
Suggests Me (2): epiregulon, epiregulon.extra