bodymapRat

DOI: 10.18129/B9.bioc.bodymapRat    

Experimental dataset from the rat BodyMap project

Bioconductor version: Release (3.9)

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Author: Stephanie Hicks [aut, cre] , Kwame Okrah [aut]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("bodymapRat")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bodymapRat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bodymapRat")

 

HTML R Script The bodymapRat data user's guide
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version 1.0.0
License CC BY 4.0
Depends R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports utils
LinkingTo
Suggests knitr, BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me qsmooth
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bodymapRat_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/bodymapRat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bodymapRat
Package Short Url http://bioconductor.org/packages/bodymapRat/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: