DropletTestFiles

This is the released version of DropletTestFiles; for the devel version, see DropletTestFiles.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Test Files for Single-Cell Droplet Utilities

Bioconductor version: Release (3.23)

Assorted files generated from droplet-based single-cell protocols, to be used for testing functions in DropletUtils. Primarily intended for storing files that directly come out of processing pipelines like 10X Genomics' CellRanger software, prior to the formation of a SingleCellExperiment object. Unlike other packages, this is not designed to provide objects that are immediately ready for analysis.

Author: Aaron Lun [ctb, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("DropletTestFiles")):

Aaron Lun. DropletTestFiles: Test Files for Single-Cell Droplet Utilities. doi:10.18129/B9.bioc.DropletTestFiles, R package version 1.22.0, https://bioconductor.org/packages/DropletTestFiles.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DropletTestFiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DropletTestFiles")

Test files for droplet-based single-cell utilities	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version	1.22.0
In Bioconductor since	BioC 3.12 (R-4.0) (6 years)
License	GPL-3
Depends
Imports	utils, ExperimentHub, AnnotationHub, S4Vectors
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown, testthat, DropletUtils
Linking To
Enhances
Depends On Me	OSCA.advanced, OSCA.intro, OSCA.workflows, scrapbook
Imports Me
Suggests Me	DropletUtils, TENxIO
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DropletTestFiles_1.22.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/DropletTestFiles
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DropletTestFiles
Package Short Url	https://bioconductor.org/packages/DropletTestFiles/
Package Downloads Report	Download Stats