nullrangesData
ExperimentHub datasets for the nullranges package
Bioconductor version: 3.23 · Package version: 1.18.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Provides datasets for the nullranges package vignette, in particular example datasets for DNase hypersensitivity sites (DHS), CTCF binding sites, and CTCF genomic interactions. These are used to demonstrate generation of null hypothesis feature sets, either through block bootstrapping or matching, in the nullranges vignette. For more details, see the data object man pages, and the R scripts for object construction provided within the package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nullrangesData")Details
| Maintainer | Michael Love <michaelisaiahlove@gmail.com> |
| Author | Michael Love [aut, cre] (ORCID: <https://orcid.org/0000-0001-8401-0545>), Wancen Mu [aut] (ORCID: <https://orcid.org/0000-0002-5061-7581>), Eric Davis [aut] (ORCID: <https://orcid.org/0000-0003-4051-3217>), Mikhail Dozmorov [aut] |
| License | GPL-3 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ChIPSeqData, ENCODE, ExperimentData, ExperimentHub, Homo_sapiens_Data, SequencingData |
| Package Short Url | https://bioconductor.org/packages/nullrangesData/ |
Citation
From within R, enter citation("nullrangesData"):
Michael Love, Wancen Mu, Eric Davis, Mikhail Dozmorov. nullrangesData: ExperimentHub datasets for the nullranges package. doi:10.18129/B9.bioc.nullrangesData, R package version 1.18.0, https://bioconductor.org/packages/nullrangesData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | nullrangesData_1.18.0.tar.gz |
Reverse dependencies
Suggests Me (2): iSEEhub, nullranges