TumourMethData

DOI: 10.18129/B9.bioc.TumourMethData  

A Collection of DNA Methylation Datasets for Human Tumour Samples and Matching Normal Samples

Bioconductor version: Release (3.18)

TumourMethData collects tumour methylation data from a variety of different tumour types (and also matching normal samples where available) and produced with different technologies (e.g. WGBS, RRBS and methylation arrays) and provides them as RangedSummarizedExperiments. This facilitates easy extraction of methylation data for regions of interest across different tumour types and studies.

Author: Richard Heery [aut, cre]

Maintainer: Richard Heery <richardheery at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TumourMethData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TumourMethData")

 

HTML	R Script	getting_tumour_methylation_from_TumourMethData
PDF		Reference Manual
Text		NEWS

Details

biocViews	CancerData, ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData
Version	1.0.0
License	Artistic-2.0
Depends	R (>= 4.2), SummarizedExperiment
Imports	ExperimentHub, GenomicRanges, HDF5Array, R.utils, rhdf5
LinkingTo
Suggests	ggplot2, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/richardheery/TumourMethData
BugReports	https://support.bioconductor.org/tag/TumourMethData
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TumourMethData_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TumourMethData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TumourMethData
Package Short Url	https://bioconductor.org/packages/TumourMethData/
Package Downloads Report	Download Stats