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Bioconductor version: Release (3.18)
TumourMethData collects tumour methylation data from a variety of different tumour types (and also matching normal samples where available) and produced with different technologies (e.g. WGBS, RRBS and methylation arrays) and provides them as RangedSummarizedExperiments. This facilitates easy extraction of methylation data for regions of interest across different tumour types and studies.
Author: Richard Heery [aut, cre]
Maintainer: Richard Heery <richardheery at gmail.com>
Citation (from within R,
enter citation("TumourMethData")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TumourMethData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TumourMethData")
HTML | R Script | getting_tumour_methylation_from_TumourMethData |
Reference Manual | ||
Text | NEWS |
biocViews | CancerData, ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData |
Version | 1.0.0 |
License | Artistic-2.0 |
Depends | R (>= 4.2), SummarizedExperiment |
Imports | ExperimentHub, GenomicRanges, HDF5Array, R.utils, rhdf5 |
LinkingTo | |
Suggests | ggplot2, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/richardheery/TumourMethData |
BugReports | https://support.bioconductor.org/tag/TumourMethData |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | TumourMethData_1.0.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/TumourMethData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TumourMethData |
Package Short Url | https://bioconductor.org/packages/TumourMethData/ |
Package Downloads Report | Download Stats |
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