epimutacionsData

DOI: 10.18129/B9.bioc.epimutacionsData    

Data for epimutacions package

Bioconductor version: Release (3.15)

This package includes the data necessary to run functions and examples in epimutacions package. Collection of DNA methylation data. The package contains 2 datasets: (1) Control ( GEO: GSE104812), (GEO: GSE97362) case samples; and (2) reference panel (GEO: GSE127824). It also contains candidate regions to be epimutations in 450k methylation arrays.

Author: Leire Abarrategui [aut, cre], Juan R. Gonzalez [aut], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut]

Maintainer: Leire Abarrategui <abarrategui.leire at gmail.com>

Citation (from within R, enter citation("epimutacionsData")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epimutacionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epimutacionsData")

 

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Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 1.0.0
License MIT + file LICENSE
Depends R (>= 4.2.0)
Imports
LinkingTo
Suggests rmarkdown, BiocStyle, knitr, ExperimentHub, minfi
SystemRequirements
Enhances
URL https://github.com/LeireAbarrategui/epimutacionsData
BugReports https://github.com/LeireAbarrategui/epimutacionsData/issues
Depends On Me epimutacions
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epimutacionsData_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/epimutacionsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epimutacionsData
Package Short Url https://bioconductor.org/packages/epimutacionsData/
Package Downloads Report Download Stats

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