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epimutacionsData

Data for epimutacions package


Bioconductor version: Release (3.18)

This package includes the data necessary to run functions and examples in epimutacions package. Collection of DNA methylation data. The package contains 2 datasets: (1) Control ( GEO: GSE104812), (GEO: GSE97362) case samples; and (2) reference panel (GEO: GSE127824). It also contains candidate regions to be epimutations in 450k methylation arrays.

Author: Leire Abarrategui [aut, cre], Juan R. Gonzalez [aut], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut]

Maintainer: Leire Abarrategui <abarrategui.leire at gmail.com>

Citation (from within R, enter citation("epimutacionsData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epimutacionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epimutacionsData")
data repository for epimutacions package HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 1.6.0
License MIT + file LICENSE
Depends R (>= 4.2.0)
Imports
System Requirements
URL https://github.com/LeireAbarrategui/epimutacionsData
Bug Reports https://github.com/LeireAbarrategui/epimutacionsData/issues
See More
Suggests rmarkdown, BiocStyle, knitr, ExperimentHub, minfi
Linking To
Enhances
Depends On Me epimutacions
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epimutacionsData_1.6.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/epimutacionsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epimutacionsData
Package Short Url https://bioconductor.org/packages/epimutacionsData/
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