MouseThymusAgeing

This is the released version of MouseThymusAgeing; for the devel version, see MouseThymusAgeing.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Bioconductor version: Release (3.23)

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

Author: Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]

Maintainer: Mike Morgan <michael.morgan at abdn.ac.uk>

Citation (from within R, enter citation("MouseThymusAgeing")):

Mike Morgan, Jeanette Baran-Gale. MouseThymusAgeing: Single-cell Transcriptomics Data of the Ageing Mouse Thymus. doi:10.18129/B9.bioc.MouseThymusAgeing, R package version 1.20.0, https://bioconductor.org/packages/MouseThymusAgeing.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseThymusAgeing")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseThymusAgeing")

Available datasets	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, SingleCellData
Version	1.20.0
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	GPL-3
Depends	SingleCellExperiment, SummarizedExperiment
Imports	ExperimentHub, methods, BiocGenerics, S4Vectors
System Requirements
URL
Bug Reports	https://github.com/MarioniLab/MouseThymusAgeing/issues

Suggests	knitr, scuttle, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	miloR
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MouseThymusAgeing_1.20.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MouseThymusAgeing
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MouseThymusAgeing
Package Short Url	https://bioconductor.org/packages/MouseThymusAgeing/
Package Downloads Report	Download Stats