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muSpaData

This is the released version of muSpaData; for the devel version, see muSpaData.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21

Multi-sample multi-group spatially resolved transcriptomic data


Bioconductor version: Release (3.23)

Data package containing a multi-sample multi-group spatial dataset in SpatialExperiment Bioconductor object format.

Author: Peiying Cai [aut, cre] ORCID iD ORCID: 0009-0001-9229-2244

Maintainer: Peiying Cai <peiying.cai at uzh.ch>

Citation (from within R, enter citation("muSpaData")):

Peiying Cai. muSpaData: Multi-sample multi-group spatially resolved transcriptomic data. doi:10.18129/B9.bioc.muSpaData, R package version 1.4.0, https://bioconductor.org/packages/muSpaData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("muSpaData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muSpaData")
Multi-sample multi-group spatial transcriptomics data HTML R Script
Reference ManualPDF
NEWSText
LICENSEText

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SingleCellData, SpatialData
Version1.4.0
In Bioconductor sinceBioC 3.21 (R-4.5) (1.5 years)
License MIT + file LICENSE
Depends R (>= 4.5.0), ExperimentHub
Imports
System Requirements
URLhttps://github.com/peicai/muSpaData
Bug Reportshttps://github.com/peicai/muSpaData/issues
See More
Suggests SpatialExperiment, ggplot2, BiocStyle, knitr, rmarkdown, R.utils
Linking To
Enhances
Depends On Me
Imports Me OSTA
Suggests Me DESpace
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package muSpaData_1.4.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/muSpaData
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/muSpaData
Package Short Url https://bioconductor.org/packages/muSpaData/
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